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The papers include correspondence, sermons, and legal and financial papers of Alfred, Ebenezeer, Henry (1741-1830), Henry (1758-1843), Horace, Naphtali, and William Daggett. Naphtali Daggett was president of Yale College from 1766 to 1777. Deeds (quit claims) of William Daggett form the bulk of the collection.

Family and business letters of Daniel Hubbard, a New York City merchant, and of Bela Hubbard, a New Haven minister and his daughter Elizabeth Hubbard Pitkin, wife of Timothy Pitkin.

The papers contain correspondence and other records of Loomis and Norton, a paper manufacturing firm in Windsor Locks, Connecticut. The papers also contain records of several textile and mining companies and those of Connecticut Canal Railroad and other companies. A small amount of personal correspondence and account books are also found in the papers.

The archives of David E. Schindel including maps, specimen information, and his dissertation.

The archives of Derek E. Briggs encompassing his career at Yale. These include primarily specimen information.

An artificial collection of diaries relating to Connecticut and other states and regions in the United States. Topics including farming, religion, military life, student life, travel, and the weather are documented.

The archives of the Division of Botany, icluding those of the Connecticut Botanical Society.

These are the miscellaneous archives associated with the Division of Entomology at the Yale Peabody Museum .

The archives of the Division of Paleobotany, including those of the Princteton University paleobotanical collections.

Deeds and other legal documents, chiefly relating to land in Hamden, Connecticut owned by Ebenezer Warner and his sons, Amos and Ebenezer. Sixteen of the transfers are to Eldad Wolcott of Hamden.